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pmid:40643718

SLC3A2 as a key anoikis-related gene for prognosis and tumor microenvironment remodeling in melanoma.

Discover oncology · 2025 doi:10.1007/s12672-025-03125-7

Paper

partial

Experiment

partial

Data

partial

Analysis

absent

Execution

absent

Execution evidence has not yet been added to this .science file. Explore its methods, data and open questions to plan the next step.
Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
id
pmid:40643718
kind
science-record
content_hash
sha256:4f24590db925d6cf799ac91f03dbe0f3d47cf4f6663514169f866f15b73cd2f1
schema
https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json
created_at
2026-11-01T10:25:51Z
updated_at
2026-11-01T10:25:51Z
generator object · 3 fields
name
corpus-assay-engine
converter
sep_to_sci_v1
source_package_schema
urn:bntrg:sep:1.0.0
paper object · 10 fields
state
partial
title
SLC3A2 as a key anoikis-related gene for prognosis and tumor microenvironment remodeling in melanoma.
doi
10.1007/s12672-025-03125-7
pmid
40643718
authors
null
journal
Discover oncology
year
2025
abstract
null
claims array · 1 item
[0] object · 6 fields
id
claim-1
statement
the headline numerical result the paper states for its main finding
kind
quantitative
state
complete
target object · 4 fields
value
0.774
unit
c-index
tolerance
null
source
chars 1801-2019 of source sha256 e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:40643718
locator
chars 1801-2019 of source sha256 e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
quote
The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.
gaps array · 2 items
[0]
abstract
[1]
authors
experiment object · 8 fields
state
partial
objective
the headline numerical result the paper states for its main finding
steps array · 3 items
[0] object · 13 fields
id
read_published_estimate
order
1
name
Read the published estimate and its interval from the source
kind
other
state
complete
blocked_on
null
description
The number a replication must land on, and the sentence it came from.
parameters object · 0 fields
inputs array · 1 item
[0]
source:pmid:40643718
outputs array · 1 item
[0]
the published estimate, its unit and its interval
instruments array · 0 items
reagents array · 0 items
[1] object · 13 fields
id
obtain_source_data
order
2
name
Obtain the source data behind the published result
kind
data-preparation
state
blocked
blocked_on
data:not_downloaded
description
The published result cannot be recomputed without the data the paper analysed.
parameters object · 0 fields
inputs array · 0 items
outputs array · 1 item
[0]
the source data with its provenance
instruments array · 0 items
reagents array · 0 items
[2] object · 13 fields
id
run_analysis
order
3
name
Run the analysis programme
kind
analysis
state
blocked
blocked_on
no owned computational capability is bound to this experiment
description
Re-run the paper's analysis on the source data and produce the registered result. | SEP input not carried into the asset list: materials:the source data behind the published result in pmid:40643718
parameters object · 0 fields
inputs array · 0 items
outputs array · 1 item
[0]
the registered result
instruments array · 0 items
reagents array · 0 items
materials array · 0 items
instruments array · 0 items
reagents array · 0 items
conditions object · 0 fields
gaps array · 3 items
[0]
step:obtain_source_data blocked on data:not_downloaded
[1]
step:run_analysis blocked on no owned computational capability is bound to this experiment
[2]
step:run_analysis input 'materials:the source data behind the published result in pmid:40643718' does not resolve to a declared asset
data object · 3 fields
state
partial
assets array · 1 item
[0] object · 15 fields
id
source:pmid:40643718
role
manuscript
format
xml
media_type
application/xml
uri
https://doi.org/10.1007/s12672-025-03125-7
sha256
sha256:e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
10.1007/s12672-025-03125-7
version
null
note
Source read by the package builder: full_text.
structure object · 1 field
access_state
full_text
gaps array · 1 item
[0]
asset:source:pmid:40643718 not verified
analysis object · 4 fields
state
absent
methods array · 0 items
targets array · 0 items
gaps array · 2 items
[0]
method
[1]
targets
capability object · 3 fields
state
absent
requirements array · 0 items
gaps array · 1 item
[0]
capability
readiness object · 8 fields
state
partial
tier
null
blocked_on
null
axes object · 0 fields
can_run object · 3 fields
dsl_operations array · 0 items
assets array · 1 item
[0]
source:pmid:40643718
steps array · 1 item
[0]
read_published_estimate
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 1 item
[0]
xml
capabilities array · 0 items
data_gaps array · 1 item
[0]
source:pmid:40643718
gaps array · 1 item
[0]
corpus_record_absent
review object · 5 fields
state
partial
machine_critique object · 7 fields
status
passed
providers array · 2 items
[0] object · 7 fields
provider
minimax
model
MiniMax-M3.1-Flash
prompt_version
full-text-reading-v1
prompt_hash
1a148c71218eaa6a547f77cbc261d182843867c49f2b9c9ee70593b103d6995a
source_hash
e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
raw_response_sha256
sha256:b7d140bc7384a8cca3fb686d93a2542cb3b2b20cd02e87ba0ec6b2079d1b60dd
raw_response_chars
5158
[1] object · 7 fields
provider
minimax_alt
model
MiniMax-M3
prompt_version
full-text-reading-v1
prompt_hash
bbdd27a1e628c1c106f7ed2526f204dffb9f96407c360b7ff115f313780997d0
source_hash
e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
raw_response_sha256
sha256:f099170b55bcdd6b3b9125dedbf4038673e49b9ed1154a8bd56339b84a5cbbd1
raw_response_chars
50997
target_providers array · 2 items
[0] object · 8 fields
provider
minimax
model
MiniMax-M3.1-Flash
prompt_version
replication-target-v2
prompt_hash
30ec5282917b8a40a2763b34864026ff42896db3eac60023ad008b7fbd710026
source_hash
e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
raw_response
{"parent_value":0.774,"unit":"C-index","evidence":"The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.","target_result":"The optimal prognostic model achieved a C-index of 0.774.","number_stated":true}
reading object · 6 fields
parent_value
0.774
unit
C-index
evidence
The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.
target_result
The optimal prognostic model achieved a C-index of 0.774.
number_stated
true
source_locator
chars 1801-2019 of source sha256 e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
recorded_at
2026-10-31T15:26:26.212447+00:00
[1] object · 8 fields
provider
minimax_alt
model
MiniMax-M3
prompt_version
replication-target-v2
prompt_hash
5130774df1eae56950ad7ba5a8342bdae042b6cfefb4e6c9b29037bac98a67e0
source_hash
e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
raw_response
<think>We need answer JSON only. Need identify single numerical result replication registered target headline numerical result paper states main finding. Likely C-index 0.774 for optimal prognostic model. Need unit paper prints. Unit perhaps "C-index" or no unit? Schema parent_value number, unit string. Evidence exact contiguous quote contains number, whole clause attribution. Candidate: "The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774." Number 0.774. Unit paper prints: C-index perhaps unit is "C-index". Headline number only. target_result concise. Need JSON valid, exact quote. Could unit be "C-index" although that's metric not unit. They insist unit must be unit paper prints. Paper prints "a C-index of 0.774", so likely unit "C-index". Number stated true. But target says headline numerical result paper states for main finding. Main finding could title SLC3A2, but headline numerical result model C-index 0.774. Other number AUC range. Single headline likely C-index. Need exact contiguous quote. We can quote full sentence exactly as source. Ensure curly quotation marks. JSON escaping not issue. "parent_value":0.774, "unit":"C-index", evidence exact. target_result perhaps "The random survival forest + gradient boosting machine model achieved a C-index of 0.774 across the TCGA training cohort and validation cohorts." That's okay but perhaps "headline number only" means report number only maybe target_result should be "0.774" or describe? Required schema asks target_result. User says report headline number only, value paper itself states. We can target_result maybe "C-index of 0.774". But output includes evidence necessarily. Unit "C-index". Let's ensure exact quote punctuation and Unicode. Sentence appears twice; use one exact. Full clause enough, exact contiguous quotation. Could quote "with a C-index of 0.774." but attribution through preceding wording? User says quote whole clause so check attribution. Full sentence best. Need no markdown.</think> {"parent_value":0.774,"unit":"C-index","evidence":"The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.","target_result":"C-index of 0.774","number_stated":true}
reading object · 6 fields
parent_value
0.774
unit
C-index
evidence
The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.
target_result
C-index of 0.774
number_stated
true
source_locator
chars 1801-2019 of source sha256 e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff
recorded_at
2026-10-31T15:26:27.634885+00:00
agreement
true
disagreements object · 3 fields
target_result object · 3 fields
minimax
The random survival forest + gradient boosting machine prognostic model achieved a C-index of 0.774.
minimax_alt
The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.
decisive
false
physical_methods object · 3 fields
minimax array · 3 items
[0]
shRNA-mediated knockdown
[1]
colony formation assays
[2]
Transwell migration assays
minimax_alt array · 3 items
[0]
shRNA-mediated knockdown of SLC3A2
[1]
colony formation assay
[2]
Transwell migration assay
decisive
false
analysis_methods object · 3 fields
minimax array · 10 items
[0]
random survival forest
[1]
gradient boosting machine
[2]
concordance index (C-index)
[3]
Kaplan–Meier survival analysis
[4]
time-dependent ROC curves
[5]
Wilcoxon rank-sum test
[6]
Pearson correlation analysis
[7]
Gene Set Variation Analysis (GSVA)
[8]
gene set enrichment analysis (GSEA)
[9]
log-rank test
minimax_alt array · 24 items
[0]
Harmony algorithm for batch-effect correction
[1]
t-SNE dimensionality reduction
[2]
AUCell enrichment scoring
[3]
CellChat intercellular communication analysis
[4]
Pearson correlation analysis
[5]
Cox regression
[6]
random survival forest
[7]
gradient boosting machine
[8]
concordance index (C-index)
[9]
Kaplan–Meier survival analysis
[10]
time-dependent ROC curves
[11]
ESTIMATE
[12]
CIBERSORT
[13]
TIMER
[14]
xCell
[15]
EPIC
[16]
MCPcounter
[17]
QUANTISEQ
[18]
ssGSEA
[19]
Gene Set Variation Analysis (GSVA)
[20]
Gene Set Enrichment Analysis (GSEA)
[21]
Wilcoxon test
[22]
Wilcoxon rank-sum test
[23]
log-rank test
decisive
false
agreement_basis object · 2 fields
policy
decisive_fields
decisive_fields array · 4 items
[0]
work_type
[1]
number_stated
[2]
parent_value
[3]
unit
blinded
true
human_critique object · 5 fields
status
not_run
reviewer
null
signed_at
null
conflict_checked
false
commentary
null
stages array · 7 items
[0] object · 4 fields
key
target_materials
status
pending
reason
null
evidence
null
[1] object · 4 fields
key
independent_readings
status
passed
reason
The independent readings are incomplete or disagree; the source evidence must resolve the difference.
evidence object · 1 field
provider_errors array · 0 items
[2] object · 4 fields
key
source_resolution
status
pending
reason
null
evidence
null
[3] object · 4 fields
key
protocol_reconstruction
status
pending
reason
null
evidence
null
[4] object · 4 fields
key
control_execution
status
pending
reason
null
evidence
null
[5] object · 4 fields
key
control_comparison
status
pending
reason
null
evidence
null
[6] object · 4 fields
key
publication
status
pending
reason
null
evidence
null
gaps array · 2 items
[0]
review.human_critique
[1]
review.machine_critique.passed
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 1 item
[0] object · 3 fields
id
package:00e77b074628aed874ee9fcc2100544b31e436f3800afa88f8811ece5b549cfd
type
sep_package
label
SEP v1 package for pmid:40643718
activities array · 1 item
[0] object · 4 fields
id
activity:conversion:pmid:40643718
type
conversion
used array · 1 item
[0]
package:00e77b074628aed874ee9fcc2100544b31e436f3800afa88f8811ece5b549cfd
agent
agent:corpus-assay-engine
agents array · 3 items
[0] object · 3 fields
id
agent:minimax
type
model
label
minimax
[1] object · 3 fields
id
agent:minimax_alt
type
model
label
minimax_alt
[2] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
source_run_id
run-20261023T122449232913
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
8eef2f3e-e946-4d0a-b19f-c9ca5f55b03a
parent_hash
00e77b074628aed874ee9fcc2100544b31e436f3800afa88f8811ece5b549cfd
fork_of
null
gaps array · 13 items
[0]
abstract
[1]
asset:source:pmid:40643718 not verified
[2]
authors
[3]
capability
[4]
corpus_record_absent
[5]
execution.not_run
[6]
method
[7]
review.human_critique
[8]
review.machine_critique.passed
[9]
step:obtain_source_data blocked on data:not_downloaded
[10]
step:run_analysis blocked on no owned computational capability is bound to this experiment
[11]
step:run_analysis input 'materials:the source data behind the published result in pmid:40643718' does not resolve to a declared asset
[12]
targets
Complete file
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"sha256:b7d140bc7384a8cca3fb686d93a2542cb3b2b20cd02e87ba0ec6b2079d1b60dd", "raw_response_chars": 5158}, {"provider": "minimax_alt", "model": "MiniMax-M3", "prompt_version": "full-text-reading-v1", "prompt_hash": "bbdd27a1e628c1c106f7ed2526f204dffb9f96407c360b7ff115f313780997d0", "source_hash": "e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff", "raw_response_sha256": "sha256:f099170b55bcdd6b3b9125dedbf4038673e49b9ed1154a8bd56339b84a5cbbd1", "raw_response_chars": 50997}], "target_providers": [{"provider": "minimax", "model": "MiniMax-M3.1-Flash", "prompt_version": "replication-target-v2", "prompt_hash": "30ec5282917b8a40a2763b34864026ff42896db3eac60023ad008b7fbd710026", "source_hash": "e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff", "raw_response": "{\"parent_value\":0.774,\"unit\":\"C-index\",\"evidence\":\"The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.\",\"target_result\":\"The optimal prognostic model achieved a C-index of 0.774.\",\"number_stated\":true}", "reading": {"parent_value": 0.774, "unit": "C-index", "evidence": "The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.", "target_result": "The optimal prognostic model achieved a C-index of 0.774.", "number_stated": true, "source_locator": "chars 1801-2019 of source sha256 e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff"}, "recorded_at": "2026-10-31T15:26:26.212447+00:00"}, {"provider": "minimax_alt", "model": "MiniMax-M3", "prompt_version": "replication-target-v2", "prompt_hash": "5130774df1eae56950ad7ba5a8342bdae042b6cfefb4e6c9b29037bac98a67e0", "source_hash": "e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff", "raw_response": "<think>We need answer JSON only. Need identify single numerical result replication registered target headline numerical result paper states main finding. Likely C-index 0.774 for optimal prognostic model. Need unit paper prints. Unit perhaps \"C-index\" or no unit? Schema parent_value number, unit string. Evidence exact contiguous quote contains number, whole clause attribution. Candidate: \"The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.\" Number 0.774. Unit paper prints: C-index perhaps unit is \"C-index\". Headline number only. target_result concise. Need JSON valid, exact quote. Could unit be \"C-index\" although that's metric not unit. They insist unit must be unit paper prints. Paper prints \"a C-index of 0.774\", so likely unit \"C-index\". Number stated true.\n\nBut target says headline numerical result paper states for main finding. Main finding could title SLC3A2, but headline numerical result model C-index 0.774. Other number AUC range. Single headline likely C-index. Need exact contiguous quote. We can quote full sentence exactly as source. Ensure curly quotation marks. JSON escaping not issue. \"parent_value\":0.774, \"unit\":\"C-index\", evidence exact. target_result perhaps \"The random survival forest + gradient boosting machine model achieved a C-index of 0.774 across the TCGA training cohort and validation cohorts.\" That's okay but perhaps \"headline number only\" means report number only maybe target_result should be \"0.774\" or describe? Required schema asks target_result. User says report headline number only, value paper itself states. We can target_result maybe \"C-index of 0.774\". But output includes evidence necessarily. Unit \"C-index\". Let's ensure exact quote punctuation and Unicode. Sentence appears twice; use one exact. Full clause enough, exact contiguous quotation. Could quote \"with a C-index of 0.774.\" but attribution through preceding wording? User says quote whole clause so check attribution. Full sentence best.\n\nNeed no markdown.</think>\n\n{\"parent_value\":0.774,\"unit\":\"C-index\",\"evidence\":\"The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.\",\"target_result\":\"C-index of 0.774\",\"number_stated\":true}", "reading": {"parent_value": 0.774, "unit": "C-index", "evidence": "The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.", "target_result": "C-index of 0.774", "number_stated": true, "source_locator": "chars 1801-2019 of source sha256 e9a29ea853dfa9b33a4ec4461eace4ec0ca68f743f12c323117270c38f79e4ff"}, "recorded_at": "2026-10-31T15:26:27.634885+00:00"}], "agreement": true, "disagreements": {"target_result": {"minimax": "The random survival forest + gradient boosting machine prognostic model achieved a C-index of 0.774.", "minimax_alt": "The “random survival forest + gradient boosting machine” model demonstrated optimal prognostic performance across the TCGA training cohort and validation cohorts (GSE19234, GSE22153, GSE65904), with a C-index of 0.774.", "decisive": false}, "physical_methods": {"minimax": ["shRNA-mediated knockdown", "colony formation assays", "Transwell migration assays"], "minimax_alt": ["shRNA-mediated knockdown of SLC3A2", "colony formation assay", "Transwell migration assay"], "decisive": false}, "analysis_methods": {"minimax": ["random survival forest", "gradient boosting machine", "concordance index (C-index)", "Kaplan–Meier survival analysis", "time-dependent ROC curves", "Wilcoxon rank-sum test", "Pearson correlation analysis", "Gene Set Variation Analysis (GSVA)", "gene set enrichment analysis (GSEA)", "log-rank test"], "minimax_alt": ["Harmony algorithm for batch-effect correction", "t-SNE dimensionality reduction", "AUCell enrichment scoring", "CellChat intercellular communication analysis", "Pearson correlation analysis", "Cox regression", "random survival forest", "gradient boosting machine", "concordance index (C-index)", "Kaplan–Meier survival analysis", "time-dependent ROC curves", "ESTIMATE", "CIBERSORT", "TIMER", "xCell", "EPIC", "MCPcounter", "QUANTISEQ", "ssGSEA", "Gene Set Variation Analysis (GSVA)", "Gene Set Enrichment Analysis (GSEA)", "Wilcoxon test", "Wilcoxon rank-sum test", "log-rank test"], "decisive": false}}, "agreement_basis": {"policy": "decisive_fields", "decisive_fields": ["work_type", "number_stated", "parent_value", "unit"]}, "blinded": true}, "human_critique": {"status": "not_run", "reviewer": null, "signed_at": null, "conflict_checked": false, "commentary": null}, "stages": [{"key": "target_materials", "status": "pending", "reason": null, "evidence": null}, {"key": "independent_readings", "status": "passed", "reason": "The independent readings are incomplete or disagree; the source evidence must resolve the difference.", "evidence": {"provider_errors": []}}, {"key": "source_resolution", "status": "pending", "reason": null, "evidence": null}, {"key": "protocol_reconstruction", "status": "pending", "reason": null, "evidence": null}, {"key": "control_execution", "status": "pending", "reason": null, "evidence": null}, {"key": "control_comparison", "status": "pending", "reason": null, "evidence": null}, {"key": "publication", "status": "pending", "reason": null, "evidence": null}], "gaps": ["review.human_critique", "review.machine_critique.passed"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "package:00e77b074628aed874ee9fcc2100544b31e436f3800afa88f8811ece5b549cfd", "type": "sep_package", "label": "SEP v1 package for pmid:40643718"}], "activities": [{"id": "activity:conversion:pmid:40643718", "type": "conversion", "used": ["package:00e77b074628aed874ee9fcc2100544b31e436f3800afa88f8811ece5b549cfd"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:minimax", "type": "model", "label": "minimax"}, {"id": "agent:minimax_alt", "type": "model", "label": "minimax_alt"}, {"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}], "source_run_id": "run-20261023T122449232913", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "8eef2f3e-e946-4d0a-b19f-c9ca5f55b03a", "parent_hash": "00e77b074628aed874ee9fcc2100544b31e436f3800afa88f8811ece5b549cfd", "fork_of": null, "generation": 1}, "gaps": ["abstract", "asset:source:pmid:40643718 not verified", "authors", "capability", "corpus_record_absent", "execution.not_run", "method", "review.human_critique", "review.machine_critique.passed", "step:obtain_source_data blocked on data:not_downloaded", "step:run_analysis blocked on no owned computational capability is bound to this experiment", "step:run_analysis input 'materials:the source data behind the published result in pmid:40643718' does not resolve to a declared asset", "targets"]}