Cancer care interventions for forcibly displaced populations in low- and middle-income countries of the Middle East and North African region affected by humanitarian crises: Protocol for a scoping review.

{"sci_version": "1.0", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:40824891", "kind": "science-record", "revision": 2, "content_hash": "sha256:fc9ff43f2d7ad739bc318b804567b670d8fac713ccd7e09b37f87dd51a0ef46e", "created_at": "2026-11-01T10:25:52Z", "updated_at": "2026-11-01T14:01:46Z", "generator": {"name": "corpus-assay-engine", "converter": "sep_to_sci_v1", "source_package_schema": "urn:bntrg:sep:1.0.0"}, "paper": {"state": "partial", "title": "Cancer care interventions for forcibly displaced populations in low- and middle-income countries of the Middle East and North African region affected by humanitarian crises: Protocol for a scoping review.", "doi": "10.1371/journal.pone.0327946", "pmid": "40824891", "authors": null, "journal": "PloS one", "year": 2025, "abstract": null, "claims": [{"id": "claim-1", "statement": "the headline numerical result the paper states for its main finding", "kind": "qualitative", "state": "blocked", "target": {"value": null, "unit": null, "tolerance": null, "source": null}, "evidence": []}], "gaps": ["abstract", "authors"]}, "experiment": {"state": "partial", "objective": "the headline numerical result the paper states for its main finding", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate and its interval from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The number a replication must land on, and the sentence it came from.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:40824891"], "outputs": ["the published estimate, its unit and its interval"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data behind the published result", "kind": "data-preparation", "state": "blocked", "blocked_on": "data:not_downloaded", "description": "The published result cannot be recomputed without the data the paper analysed.", "duration_hours": null, "parameters": {}, "inputs": [], "outputs": ["the source data with its provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the analysis programme", "kind": "analysis", "state": "blocked", "blocked_on": "no owned computational capability is bound to this experiment", "description": "Re-run the paper's analysis on the source data and produce the registered result. | SEP input not carried into the asset list: materials:the source data behind the published result in pmid:40824891", "duration_hours": null, "parameters": {}, "inputs": [], "outputs": ["the registered result"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": ["step:obtain_source_data blocked on data:not_downloaded", "step:run_analysis blocked on no owned computational capability is bound to this experiment", "step:run_analysis input 'materials:the source data behind the published result in pmid:40824891' does not resolve to a declared asset"]}, "data": {"state": "partial", "assets": [{"id": "source:pmid:40824891", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1371/journal.pone.0327946", "sha256": "sha256:a96ebbdf98176ab5b1f1e632e16d8caa2698ea1f3c5dc2b8718b21f1cca64402", "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.1371/journal.pone.0327946", "version": null, "note": "Source read by the package builder: full_text.", "structure": {"access_state": "full_text"}}, {"id": "asset:table:pmid:40824891:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:e13ce95e93dedf8e39f8a2f10086ee1f5e272b8a33ab0e8e67d4ea279fed7bb8", "bytes": 1375, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[8]/table-wrap[1]#pone.0327946.t001", "version": null, "note": "Country level overview for fragile and conflict-related conditions.", "structure": {"pmcid": "PMC12360602", "section_index": 8, "section_title": "Context", "row_count": 12, "column_count": 6}, "table": {"label": "Table 1", "caption": "Country level overview for fragile and conflict-related conditions.", "rows": [["Country", "Years Experiencing Fragile and Conflict-affected Situations 2005–2023 [19]", "2024 Type of Ongoing Crisis*", "2024 INFORM Index of most severe crisis**", "GDP of country (World Bank data in current US$ millions)***"], ["Djibouti", "2006-20092017-2019", "7 years", "Hunger crisis and climate crisis(Drought)", "2.8", "3,136.1"], ["Egypt", "N/A", "0 years", "(Syria Regional Crisis)****", "4.2", "4,295.4"], ["Jordan", "N/A", "0 years", "Syria Regional Crisis", "4.2", "4,311.0"], ["Lebanon", "2016-2023", "7 years", "Syria Regional Crisis", "4.2", "4,136.1"], ["Mauritania", "2007", "1 year", "Food security", "2.6", "2,065.2"], ["Occupied Palestinian Territories", "2006-2023", "17 years", "Conflict", "4.2", "Not available"], ["Somalia", "2005-2023", "18 years", "Complex crisis (displacement, violence, floods, drought)", "4.7", "592.1"], ["Sudan", "2005-2023", "18 years", "Complex crisis (displacement, violence, floods)", "4.8", "1,102.1"], ["South Sudan", "2013-2023", "10 years", "Complex crisis (Conflict, floods, displacement)", "4.5", "1,071.8"], ["Syria", "2013-2023", "10 years", "Syrian Conflict", "4.5", "420.6"], ["Yemen", "2009-2023", "14 years", "Conflict in Yemen", "4.7", "650.3"]], "row_count": 12, "column_count": 6, "numeric_cells": 44, "header_rows": 1, "locator": "section[8]/table-wrap[1]#pone.0327946.t001"}}], "gaps": ["asset:source:pmid:40824891 not verified"]}, "analysis": {"state": "absent", "methods": [], "targets": [], "gaps": ["method", "targets"]}, "capability": {"state": "absent", "requirements": [], "gaps": ["capability"]}, "readiness": {"state": "partial", "tier": null, "blocking_axis": null, "blocked_on": null, "axes": {}, "can_run": {"dsl_operations": [], "assets": ["source:pmid:40824891", "asset:table:pmid:40824891:1"], "steps": ["read_published_estimate"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": ["xml"], "capabilities": [], "data_gaps": ["source:pmid:40824891"]}, "gaps": ["corpus_record_absent"]}, "review": {"state": "partial", "machine_critique": {"status": "passed", "providers": [{"provider": "minimax", "model": "MiniMax-M3.1-Flash", "prompt_version": "full-text-reading-v1", "prompt_hash": "3c24855b79b6c92cc1b745f174dc05686d4905ca941c9701ae62dd35d69035f6", "source_hash": "a96ebbdf98176ab5b1f1e632e16d8caa2698ea1f3c5dc2b8718b21f1cca64402", "raw_response_sha256": "sha256:ec71a5bf012db786f7d5ff10bfd226191ab5fac50c9feb19910f1242363217d3", "raw_response_chars": 2653}, {"provider": "minimax_alt", "model": "MiniMax-M3", "prompt_version": "full-text-reading-v1", "prompt_hash": "67686e9dbabe0857dd638605f9bf0bf09341ca139741d498c627221ba6a0f3d8", "source_hash": "a96ebbdf98176ab5b1f1e632e16d8caa2698ea1f3c5dc2b8718b21f1cca64402", "raw_response_sha256": "sha256:62d344da6cfd2c2ce31f98aee431f26826f9fa2c217a8139c503304b721272f4", "raw_response_chars": 34175}], "target_providers": [{"provider": "minimax", "model": "MiniMax-M3.1-Flash", "prompt_version": "replication-target-v2", "prompt_hash": "c89163837d688fd98202c2b9388a5f629da5eb721131b6305f94a26fe8be5f6d", "source_hash": "a96ebbdf98176ab5b1f1e632e16d8caa2698ea1f3c5dc2b8718b21f1cca64402", "raw_response": "{\"parent_value\":0,\"unit\":\"\",\"evidence\":\"\",\"target_result\":\"This is a protocol for a scoping review; the text states no numerical result for the registered target.\",\"number_stated\":false}", "reading": {"parent_value": 0, "unit": "", "evidence": "", "target_result": "This is a protocol for a scoping review; the text states no numerical result for the registered target.", "number_stated": false, "source_locator": null}, "recorded_at": "2026-10-31T15:30:09.944386+00:00"}, {"provider": "minimax_alt", "model": "MiniMax-M3", "prompt_version": "replication-target-v2", "prompt_hash": "c36c288bf35dbd89790ec702922b7d588941840426c688dec529cf58b8709179", "source_hash": "a96ebbdf98176ab5b1f1e632e16d8caa2698ea1f3c5dc2b8718b21f1cca64402", "raw_response": "<think>We need answer JSON object only. Need inspect source. Protocol no results/headline numerical result for main finding. Need number_stated false, parent_value 0, unit \"\", evidence \"\", target_result what text states instead. Need formulate concise. Exact requirements: if no number for registered target, set false etc and say in target_result what text does state instead. Source states protocol/objective, not numerical result. Could say \"The paper is a protocol for a scoping review and states that it will describe and assess cancer treatment interventions for forcibly displaced populations in MENA LMIC humanitarian settings; no headline numerical result is reported.\" Need valid JSON. parent_value numeric 0. Ensure no evidence. JSON escaping perhaps apostrophe no issue.</think>\n\n{\"parent_value\":0,\"unit\":\"\",\"evidence\":\"\",\"target_result\":\"This is a protocol for a scoping review that will describe and assess cancer treatment interventions for forcibly displaced populations in LMIC humanitarian settings in the MENA region; no headline numerical result is reported.\",\"number_stated\":false}", "reading": {"parent_value": 0, "unit": "", "evidence": "", "target_result": "This is a protocol for a scoping review that will describe and assess cancer treatment interventions for forcibly displaced populations in LMIC humanitarian settings in the MENA region; no headline numerical result is reported.", "number_stated": false, "source_locator": null}, "recorded_at": "2026-10-31T15:30:09.220866+00:00"}], "agreement": true, "disagreements": {"target_result": {"minimax": "Not reported; this is a protocol for a scoping review and contains no headline numerical result.", "minimax_alt": "No headline numerical result is reported in the supplied protocol.", "decisive": false}, "analysis_methods": {"minimax": ["Scoping review", "Narrative summary of findings", "Frequency counts", "Descriptive statistics", "Evidence gap map"], "minimax_alt": ["scoping review using JBI methodology", "frequency counts", "descriptive statistics", "narrative summary of findings", "evidence gap map"], "decisive": false}}, "agreement_basis": {"policy": "decisive_fields", "decisive_fields": ["work_type", "number_stated", "parent_value", "unit"]}, "blinded": true}, "human_critique": {"status": "not_run", "reviewer": null, "signed_at": null, "conflict_checked": false, "commentary": null}, "stages": [{"key": "target_materials", "status": "pending", "reason": null, "evidence": null}, {"key": "independent_readings", "status": "passed", "reason": "The independent readings are incomplete or disagree; the source evidence must resolve the difference.", "evidence": {"provider_errors": []}}, {"key": "source_resolution", "status": "pending", "reason": null, "evidence": null}, {"key": "protocol_reconstruction", "status": "pending", "reason": null, "evidence": null}, {"key": "control_execution", "status": "pending", "reason": null, "evidence": null}, {"key": "control_comparison", "status": "pending", "reason": null, "evidence": null}, {"key": "publication", "status": "pending", "reason": null, "evidence": null}], "gaps": ["review.human_critique", "review.machine_critique.passed"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "package:7b518b74bed222e00d16012c488117bfc3db5a712f84eb7c81130071fe9814eb", "type": "sep_package", "label": "SEP v1 package for pmid:40824891"}], "activities": [{"id": "activity:conversion:pmid:40824891", "type": "conversion", "used": ["package:7b518b74bed222e00d16012c488117bfc3db5a712f84eb7c81130071fe9814eb"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:minimax", "type": "model", "label": "minimax"}, {"id": "agent:minimax_alt", "type": "model", "label": "minimax_alt"}, {"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}], "source_run_id": "run-20261023T122449232913", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:40824891", "parent_hash": "sha256:a61cdcd2ec586586e8a2092d1610c7910a5779ac0755f7496b14db97365a7165", "fork_of": null, "generation": 2}, "gaps": ["abstract", "asset:source:pmid:40824891 not verified", "authors", "capability", "corpus_record_absent", "execution.not_run", "method", "review.human_critique", "review.machine_critique.passed", "step:obtain_source_data blocked on data:not_downloaded", "step:run_analysis blocked on no owned computational capability is bound to this experiment", "step:run_analysis input 'materials:the source data behind the published result in pmid:40824891' does not resolve to a declared asset", "targets"]}