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pmid:41354084
TMEM106A as a Macrophage-Associated Biomarker of Prognosis in IDH-Wildtype Glioma: Integrative Multi-Omics and Spatial Analyses.
Cancer medicine · 2025 doi:10.1002/cam4.71454
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Complete file
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in other cancers.", "rows": [["Cancer type", "Experimental Findings (Mechanistic Insights)", "Functional", "Ref"], ["Non–Small Cell Lung Cancer (NSCLC)", "TMEM106A is downregulated in NSCLC. Overexpression reduces proliferation, migration, invasion, and induces apoptosis. TMEM106A also reverses EMT (↑E‐cadherin, ↓N‐cadherin, and vimentin) and inhibits the PI3K–Akt–NFκB pathway.", "Tumor suppressor (inhibits growth and EMT)", "[29]"], ["Gastric cancer", "Silencing via promoter hypermethylation renders TMEM106A absent or low in tumors. Restoring TMEM106A suppresses growth, induces apoptosis, and slows the expansion of xenograft tumors. Re‐expression triggers the activation of caspase‐2, −9, and −3, as well as BID cleavage, leading to PARP inactivation. Approximately 89% of GCs exhibit TMEM106A methylation, which correlates with metastasis.", "Tumor suppressor (pro‐apoptotic, epigenetically silenced)", "[30]"], ["Renal cell carcinoma (RCC)", "TMEM106A is downregulated in RCC. Overexpression slows proliferation and migration while inducing caspase–3–dependent apoptosis. Knockdown in normal cells boosts colony formation. TMEM106A thus acts as a tumor suppressor in RCC.", "Tumor suppressor (restricts proliferation & survival)", "[31]"], ["Hepatocellular carcinoma (HCC)", "TMEM106A is markedly downregulated (often via promoter methylation). Highly metastatic HCC cells exhibit lower TMEM106A levels, and these low levels predict poor postoperative survival. Re‐expression inhibits migration, invasion, and lung metastases, functioning as an anti‐metastatic suppressor.", "Tumor suppressor", "[32]"]], "row_count": 5, "column_count": 4, "numeric_cells": 8, "header_rows": 1, "locator": "section[34]/table-wrap[1]#cam471454-tbl-0003"}}], "gaps": ["asset:source:pmid:41354084 not verified"]}, "analysis": {"state": "absent", "methods": [], "targets": [], "gaps": ["method", "targets"]}, "capability": {"state": "absent", "requirements": [], "gaps": ["capability"]}, "readiness": {"state": "partial", "tier": null, "blocking_axis": null, "blocked_on": null, "axes": {}, "can_run": {"dsl_operations": [], "assets": ["source:pmid:41354084", "asset:table:pmid:41354084:1", "asset:table:pmid:41354084:2", "asset:table:pmid:41354084:3"], "steps": ["read_published_estimate"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": ["xml"], "capabilities": [], "data_gaps": ["source:pmid:41354084"]}, "gaps": ["corpus_record_absent"]}, "review": {"state": "partial", "machine_critique": {"status": "blocked", "providers": [], "target_providers": [], "agreement": false, "disagreements": [], "agreement_basis": {"policy": "decisive_fields", "decisive_fields": ["work_type", "number_stated", "parent_value", "unit"]}, "blinded": true}, "human_critique": {"status": "not_run", "reviewer": null, "signed_at": null, "conflict_checked": false, "commentary": null}, "stages": [{"key": "target_materials", "status": "pending", "reason": null, "evidence": null}, {"key": "independent_readings", "status": "blocked", "reason": "The independent readings are incomplete or disagree; the source evidence must resolve the difference.", "evidence": {"provider_errors": [{"provider": "minimax", "model": null, "reason": "HTTP Error 429: Too Many Requests", "raw_response": null}, {"provider": "minimax_alt", "model": null, "reason": "HTTP Error 429: Too Many Requests", "raw_response": null}, {"provider": "minimax", "model": null, "reason": "HTTP Error 429: Too Many Requests", "raw_response": null}, {"provider": "minimax_alt", "model": null, "reason": "HTTP Error 429: Too Many Requests", "raw_response": null}]}}, {"key": "source_resolution", "status": "pending", "reason": null, "evidence": null}, {"key": "protocol_reconstruction", "status": "pending", "reason": null, "evidence": null}, {"key": "control_execution", "status": "pending", "reason": null, "evidence": null}, {"key": "control_comparison", "status": "pending", "reason": null, "evidence": null}, {"key": "publication", "status": "pending", "reason": null, "evidence": null}], "gaps": ["review.human_critique", "review.machine_critique.blocked", "review.machine_critique.providers"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "package:3c1b1d9adad17e270c93286d7a8f27b04dd4e96752ead8d1711a82ae503f011d", "type": "sep_package", "label": "SEP v1 package for pmid:41354084"}], "activities": [{"id": "activity:conversion:pmid:41354084", "type": "conversion", "used": ["package:3c1b1d9adad17e270c93286d7a8f27b04dd4e96752ead8d1711a82ae503f011d"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}], "source_run_id": "run-20261023T122449232913", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:41354084", "parent_hash": "sha256:b4da7963f57f005eca0117b25c6d619549e3f21b97774d2f15778763d27bbe01", "fork_of": null, "generation": 2}, "gaps": ["abstract", "asset:source:pmid:41354084 not verified", "authors", "capability", "corpus_record_absent", "execution.not_run", "method", "review.human_critique", "review.machine_critique.blocked", "review.machine_critique.providers", "step:obtain_source_data blocked on data:not_downloaded", "step:run_analysis blocked on no owned computational capability is bound to this experiment", "step:run_analysis input 'materials:the source data behind the published result in pmid:41354084' does not resolve to a declared asset", "targets"]}