Corpus Engine Towards a reproducible .science file.

The published catalogue

Published .science files

Choose a paper to inspect its claims, methods and available data. Each versioned .science file shows what has been extracted and what still needs checking.

9,746 .science files found

pmid:28508029

Methods structured

A B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac Disease.

Cellular and molecular gastroenterology and hepatology · 2017 doi:10.1016/j.jcmgh.2017.01.011

Claims
2
Methods
1
Data assets
6
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:39382729

Method detail partial

A basement membrane-related signature for prognosis and immunotherapy benefit in bladder cancer based on machine learning.

Discover oncology · 2024 doi:10.1007/s12672-024-01381-7

Claims
3
Methods
1
Data assets
5
Readiness
R4

Blocked on method: method:not_determinable

pmid:34487148

Method detail partial

A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors.

Bioinformatics (Oxford, England) · 2021 doi:10.1093/bioinformatics/btab637

Claims
3
Methods
1
Data assets
2
Readiness
R4

Blocked on method: method:not_determinable

pmid:30875429

Method detail partial

A Bayesian model for single cell transcript expression analysis on MERFISH data.

Bioinformatics (Oxford, England) · 2019 doi:10.1093/bioinformatics/bty718

Claims
3
Methods
1
Data assets
1
Readiness
R4

Blocked on data: data:accession_absent

pmid:32243168

Method detail partial

A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics.

Journal of proteome research · 2020 doi:10.1021/acs.jproteome.9b00796

Claims
3
Methods
2
Data assets
3
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:40866376

Method detail partial

A benchmark database of ten years of prospective next-day earthquake forecasts in California from the Collaboratory for the Study of Earthquake Predictability.

Scientific data · 2025 doi:10.1038/s41597-025-05766-3

Claims
2
Methods
1
Data assets
1
Readiness
R4

Blocked on data: data:accession_absent

pmid:38312639

Method detail partial

A bioinformatic analysis found low expression and clinical significance of ATF4 in breast cancer.

Heliyon · 2024 doi:10.1016/j.heliyon.2024.e24669

Claims
2
Methods
6
Data assets
5
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:30363662

Method detail partial

A Bioinformatic Profile of Gene Expression of Colorectal Carcinoma Derived Organoids.

BioMed research international · 2018 doi:10.1155/2018/2594076

Claims
2
Methods
1
Data assets
2
Readiness
R4

Blocked on method: method:not_determinable

pmid:40778222

Method detail partial

A bioinformatics analysis of the correlation between hepatic ischemia-reperfusion injury and postoperative cognitive dysfunction.

Frontiers in genetics · 2025 doi:10.3389/fgene.2025.1607446

Claims
3
Methods
2
Data assets
3
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:35116249

Methods structured

A bioinformatics analysis to evaluate the prognostic value of stemness-related genes in gastric cancer.

Translational cancer research · 2021 doi:10.21037/tcr-20-2622

Claims
3
Methods
5
Data assets
3
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:35915456

Method detail partial

A bioinformatics analysis: ZFHX4 is associated with metastasis and poor survival in ovarian cancer.

Journal of ovarian research · 2022 doi:10.1186/s13048-022-01024-x

Claims
3
Methods
3
Data assets
1
Readiness
R4

Blocked on data: data:accession_absent

pmid:34131597

Method detail partial

A bioinformatics approach for identifying potential molecular mechanisms and key genes involved in COVID-19 associated cardiac remodeling.

Gene reports · 2021 doi:10.1016/j.genrep.2021.101246

Claims
2
Methods
3
Data assets
6
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:38737277

Methods structured

A bioinformatics approach to systematically analyze the molecular patterns of monkeypox virus-host cell interactions.

Heliyon · 2024 doi:10.1016/j.heliyon.2024.e30483

Claims
3
Methods
2
Data assets
3
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:40320470

Method detail partial

A bioinformatics exploration of lung adenocarcinoma identifies hub genes with prognostic significance: from data to discovery.

Journal of the Egyptian National Cancer Institute · 2025 doi:10.1186/s43046-025-00273-3

Claims
3
Methods
4
Data assets
5
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:36238159

Methods structured

A bioinformatics framework to identify the biomarkers and potential drugs for the treatment of colorectal cancer.

Frontiers in genetics · 2022 doi:10.3389/fgene.2022.1017539

Claims
3
Methods
3
Data assets
2
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:35165251

Method detail partial

A Bioinformatics Study of Differentially Expressed Genes in Microarrays of Dorsal Root Ganglia from Rat Models of Neuropathic Pain.

Medical science monitor : international medical journal of experimental and clinical research · 2022 doi:10.12659/MSM.934122

Claims
3
Methods
3
Data assets
5
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:35813746

Method detail partial

A bioinformatics-based immune-related prognostic index for lung adenocarcinoma that predicts patient response to immunotherapy and common treatments.

Journal of thoracic disease · 2022 doi:10.21037/jtd-22-494

Claims
3
Methods
6
Data assets
2
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:40867600

Method not extracted

A Brief Review of MicroRNA Profiling in Human Prostate Cancer Tissues and Plasma.

Biomolecules · 2025 doi:10.3390/biom15081156

Claims
1
Methods
0
Data assets
3
Readiness
Not tiered

pmid:35479936

Method detail partial

A Cancer Associated Fibroblasts-Related Six-Gene Panel for Anti-PD-1 Therapy in Melanoma Driven by Weighted Correlation Network Analysis and Supervised Machine Learning.

Frontiers in medicine · 2022 doi:10.3389/fmed.2022.880326

Claims
3
Methods
8
Data assets
4
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:41398765

Method not extracted

A cancer-testis antigen signature for predicting prognosis and response to immunotherapy in acute myeloid leukemia.

Medicine · 2025 doi:10.1097/md.0000000000046374

Claims
1
Methods
0
Data assets
2
Readiness
Not tiered

pmid:39004188

Method detail partial

A Carrier-Based Quantitative Proteomics Method Applied to Biomarker Discovery in Pericardial Fluid.

Molecular & cellular proteomics : MCP · 2024 doi:10.1016/j.mcpro.2024.100812

Claims
3
Methods
1
Data assets
2
Readiness
R1

Blocked on none: nothing:replicable_now

pmid:26305468

Method not extracted

A Catalog of Proteins Expressed in the AG Secreted Fluid during the Mature Phase of the Chinese Mitten Crabs (Eriocheir sinensis).

PloS one · 2015 doi:10.1371/journal.pone.0136266

Claims
2
Methods
0
Data assets
3
Readiness
R4

Blocked on method: method:not_determinable

pmid:40547199

Method not extracted

A CD8+ T Cell Infiltration-Driven Prognostic Signature for Gastric Cancer: Bridging Tumor Immunity and Clinical Outcomes.

International journal of genomics · 2025 doi:10.1155/ijog/6629479

Claims
1
Methods
0
Data assets
1
Readiness
Not tiered

pmid:36341357

Methods structured

A CD8+ T cell-associated immune gene panel for prediction of the prognosis and immunotherapeutic effect of melanoma.

Frontiers in immunology · 2022 doi:10.3389/fimmu.2022.1039565

Claims
2
Methods
5
Data assets
4
Readiness
R1

Blocked on none: nothing:replicable_now