The published catalogue
Published .science files
Choose a paper to inspect its claims, methods and available data. Each versioned .science file shows what has been extracted and what still needs checking.
9,746 .science files found
pmid:28508029
Methods structuredA B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac Disease.
Cellular and molecular gastroenterology and hepatology · 2017 doi:10.1016/j.jcmgh.2017.01.011
- Claims
- 2
- Methods
- 1
- Data assets
- 6
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:39382729
Method detail partialA basement membrane-related signature for prognosis and immunotherapy benefit in bladder cancer based on machine learning.
Discover oncology · 2024 doi:10.1007/s12672-024-01381-7
- Claims
- 3
- Methods
- 1
- Data assets
- 5
- Readiness
- R4
Blocked on method: method:not_determinable
pmid:34487148
Method detail partialA Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors.
Bioinformatics (Oxford, England) · 2021 doi:10.1093/bioinformatics/btab637
- Claims
- 3
- Methods
- 1
- Data assets
- 2
- Readiness
- R4
Blocked on method: method:not_determinable
pmid:30875429
Method detail partialA Bayesian model for single cell transcript expression analysis on MERFISH data.
Bioinformatics (Oxford, England) · 2019 doi:10.1093/bioinformatics/bty718
- Claims
- 3
- Methods
- 1
- Data assets
- 1
- Readiness
- R4
Blocked on data: data:accession_absent
pmid:32243168
Method detail partialA Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics.
Journal of proteome research · 2020 doi:10.1021/acs.jproteome.9b00796
- Claims
- 3
- Methods
- 2
- Data assets
- 3
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:40866376
Method detail partialA benchmark database of ten years of prospective next-day earthquake forecasts in California from the Collaboratory for the Study of Earthquake Predictability.
Scientific data · 2025 doi:10.1038/s41597-025-05766-3
- Claims
- 2
- Methods
- 1
- Data assets
- 1
- Readiness
- R4
Blocked on data: data:accession_absent
pmid:38312639
Method detail partialA bioinformatic analysis found low expression and clinical significance of ATF4 in breast cancer.
Heliyon · 2024 doi:10.1016/j.heliyon.2024.e24669
- Claims
- 2
- Methods
- 6
- Data assets
- 5
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:30363662
Method detail partialA Bioinformatic Profile of Gene Expression of Colorectal Carcinoma Derived Organoids.
BioMed research international · 2018 doi:10.1155/2018/2594076
- Claims
- 2
- Methods
- 1
- Data assets
- 2
- Readiness
- R4
Blocked on method: method:not_determinable
pmid:40778222
Method detail partialA bioinformatics analysis of the correlation between hepatic ischemia-reperfusion injury and postoperative cognitive dysfunction.
Frontiers in genetics · 2025 doi:10.3389/fgene.2025.1607446
- Claims
- 3
- Methods
- 2
- Data assets
- 3
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:35116249
Methods structuredA bioinformatics analysis to evaluate the prognostic value of stemness-related genes in gastric cancer.
Translational cancer research · 2021 doi:10.21037/tcr-20-2622
- Claims
- 3
- Methods
- 5
- Data assets
- 3
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:35915456
Method detail partialA bioinformatics analysis: ZFHX4 is associated with metastasis and poor survival in ovarian cancer.
Journal of ovarian research · 2022 doi:10.1186/s13048-022-01024-x
- Claims
- 3
- Methods
- 3
- Data assets
- 1
- Readiness
- R4
Blocked on data: data:accession_absent
pmid:34131597
Method detail partialA bioinformatics approach for identifying potential molecular mechanisms and key genes involved in COVID-19 associated cardiac remodeling.
Gene reports · 2021 doi:10.1016/j.genrep.2021.101246
- Claims
- 2
- Methods
- 3
- Data assets
- 6
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:38737277
Methods structuredA bioinformatics approach to systematically analyze the molecular patterns of monkeypox virus-host cell interactions.
Heliyon · 2024 doi:10.1016/j.heliyon.2024.e30483
- Claims
- 3
- Methods
- 2
- Data assets
- 3
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:40320470
Method detail partialA bioinformatics exploration of lung adenocarcinoma identifies hub genes with prognostic significance: from data to discovery.
Journal of the Egyptian National Cancer Institute · 2025 doi:10.1186/s43046-025-00273-3
- Claims
- 3
- Methods
- 4
- Data assets
- 5
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:36238159
Methods structuredA bioinformatics framework to identify the biomarkers and potential drugs for the treatment of colorectal cancer.
Frontiers in genetics · 2022 doi:10.3389/fgene.2022.1017539
- Claims
- 3
- Methods
- 3
- Data assets
- 2
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:35165251
Method detail partialA Bioinformatics Study of Differentially Expressed Genes in Microarrays of Dorsal Root Ganglia from Rat Models of Neuropathic Pain.
Medical science monitor : international medical journal of experimental and clinical research · 2022 doi:10.12659/MSM.934122
- Claims
- 3
- Methods
- 3
- Data assets
- 5
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:35813746
Method detail partialA bioinformatics-based immune-related prognostic index for lung adenocarcinoma that predicts patient response to immunotherapy and common treatments.
Journal of thoracic disease · 2022 doi:10.21037/jtd-22-494
- Claims
- 3
- Methods
- 6
- Data assets
- 2
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:40867600
Method not extractedA Brief Review of MicroRNA Profiling in Human Prostate Cancer Tissues and Plasma.
Biomolecules · 2025 doi:10.3390/biom15081156
- Claims
- 1
- Methods
- 0
- Data assets
- 3
- Readiness
- Not tiered
pmid:35479936
Method detail partialA Cancer Associated Fibroblasts-Related Six-Gene Panel for Anti-PD-1 Therapy in Melanoma Driven by Weighted Correlation Network Analysis and Supervised Machine Learning.
Frontiers in medicine · 2022 doi:10.3389/fmed.2022.880326
- Claims
- 3
- Methods
- 8
- Data assets
- 4
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:41398765
Method not extractedA cancer-testis antigen signature for predicting prognosis and response to immunotherapy in acute myeloid leukemia.
Medicine · 2025 doi:10.1097/md.0000000000046374
- Claims
- 1
- Methods
- 0
- Data assets
- 2
- Readiness
- Not tiered
pmid:39004188
Method detail partialA Carrier-Based Quantitative Proteomics Method Applied to Biomarker Discovery in Pericardial Fluid.
Molecular & cellular proteomics : MCP · 2024 doi:10.1016/j.mcpro.2024.100812
- Claims
- 3
- Methods
- 1
- Data assets
- 2
- Readiness
- R1
Blocked on none: nothing:replicable_now
pmid:26305468
Method not extractedA Catalog of Proteins Expressed in the AG Secreted Fluid during the Mature Phase of the Chinese Mitten Crabs (Eriocheir sinensis).
PloS one · 2015 doi:10.1371/journal.pone.0136266
- Claims
- 2
- Methods
- 0
- Data assets
- 3
- Readiness
- R4
Blocked on method: method:not_determinable
pmid:40547199
Method not extractedA CD8+ T Cell Infiltration-Driven Prognostic Signature for Gastric Cancer: Bridging Tumor Immunity and Clinical Outcomes.
International journal of genomics · 2025 doi:10.1155/ijog/6629479
- Claims
- 1
- Methods
- 0
- Data assets
- 1
- Readiness
- Not tiered
pmid:36341357
Methods structuredA CD8+ T cell-associated immune gene panel for prediction of the prognosis and immunotherapeutic effect of melanoma.
Frontiers in immunology · 2022 doi:10.3389/fimmu.2022.1039565
- Claims
- 2
- Methods
- 5
- Data assets
- 4
- Readiness
- R1
Blocked on none: nothing:replicable_now